Welcome to sideRETRO’s documentation!

Contents:

• Introduction
  • Wait, what is retrocopy?
  • Features
  • How it works
  • Obtaining sideRETRO
  • No Warranty
  • Reporting Bugs
  • Citation
  • Further Information
• Installation
  • Building requirements
  • Installing Meson
  • Project requirements
  • Compiling and installing
• Using sideRETRO
  • General Syntax
  • Command process-sample
  • Command merge-call
  • Command make-vcf
  • Dealing with CRAM format
  • A Practical Workflow
  • Running with Docker
• Retrocopy in a nutshell
  • LINE
  • SINE
  • Retrocopy and diseases
  • References and Further Reading
• Methodology
  • Abnormal alignment
  • Clustering
  • Genotype
  • Orientation
  • References and Further Reading
• Results
  • Simulated data
  • Real data
  • References and Further Reading
• Authors

• Search Page